ADVERTISEMENT
One hand holding the other, depicting pain in the joints

A Bacterial Culprit for Rheumatoid Arthritis

Scientists identified a species of Subdoligranulum that may drive disease.

Hannah Thomasy
Hannah Thomasy, PhD, Drug Discovery News

Hannah Thomasy is a freelance science journalist with a PhD in neuroscience from the University of Washington. She is currently based out of Seattle and Toronto.

View full profile.


Learn about our editorial policies.

ABOVE: © ISTOCK.COM, SEFA OZEL

Rheumatoid arthritis (RA) is a debilitating autoimmune condition that affects millions of people across the globe (1). The ultimate cause of RA is largely mysterious. While researchers have long suspected that the microbiome influenced development of the disease, the specific microbe (or microbes) has eluded identification.

Now, in a recent Science Translational Medicine paper, researchers reported a strain of Subdoligranulum bacteria that may drive RA development (2). Some people at risk for the disease have antibodies against this bacteria, and Subdoligranulum activation of T cells was more prevalent in people with RA than in healthy controls. Perhaps even more intriguingly, mice given this bacterium developed a condition similar to human RA.

Identifying this bacterium was no simple task. First, the research team, a collaboration between scientists at the University of Colorado, Stanford University, and the Benaroya Research Institute, screened blood donated by people at risk for RA or with early-stage RA for RA-related autoantibodies.

Then researchers tested whether any of these autoantibodies also targeted human intestinal bacteria. They mixed the antibodies with bacteria from stool samples donated by healthy people and people with RA. They then sequenced the bacterial species to which the autoantibodies attached. These RA antibodies cross-reacted with many species of bacteria, largely from Lachnospiraceae or Ruminococcaceae, two closely related families.

To study these species in more detail, researchers cultured bacteria from the stool of an individual who had high levels of these two bacterial families present. Two types of Subdoligranulum bacteria, which they called isolates 1 and 7, emerged as potential candidates for driving RA development. Compared to isolate 1, isolate 7 was a more potent activator of T cells in blood from RA patients.

The reason I think this line of research is particularly exciting is that it could very well get at an actual beginning of the disease. 
- Rabi Upadhyay, NYU Grossman School of Medicine

To find out if isolate 7 bacteria actually caused disease, scientists fed the bacteria to mice. Kristine Kuhn, a study coauthor and rheumatologist at the University of Colorado, said that she didn’t expect anything to happen when the team gave the mice the bacteria without another agent to disturb the immune system.

“We thought we were going to have to rev their immune systems up with an adjuvant or something,” said Kuhn. “Meagan [Chriswell, another author] was monitoring the mice, making sure that they had stable colonization. After a couple of weeks — I happened to be out of town — she called me up and she said, ‘Kristine, you'll never believe this, but the mice are getting swollen paws.” This is similar to the swollen hand and finger joints experienced by people with RA.

While other bacteria have previously been associated with human RA, Subdoligranulum is so far unique in its ability to cause RA-like symptoms in mice without the addition of another immune insult (3).

The similarities between the mice and human RA patients extended beyond what could be seen with the naked eye. “There were antibodies getting into the joints, much like we see in rheumatoid arthritis,” said Kuhn. “So, we started to profile the antibodies that were in the serum of the mice and we found that a lot of those antibodies targeted the same proteins that are targeted in rheumatoid arthritis.”

Rabi Upadhyay, a medical oncologist who studies the microbiome, immunity, and cancer at the NYU Grossman School of Medicine and was not involved in this work, said that while this study convincingly demonstrated that this species could produce an RA-like condition in mice, it may be too soon to pin all the blame on Subdoligranulum alone, since the study didn’t necessarily rule out other species.

“It's hard to know how big of a player this specific isolate is,” he said. “It could be the dominant player, and that's why they came across it first. But it could be that if they went back and did larger screens, that they would come up with more — that [Subdoligranulum] would be just one of many.”

In keeping with this, the researchers only found this Subdoligranulum strain in 16.7 percent of people at risk or with early-stage RA, indicating that this strain is likely not the sole driver of disease.

Nevertheless, Upadhyay said that it’s still an exciting study. Currently, there are no therapies that can prevent or cure the disease, and the immunosuppressant treatments that alleviate symptoms can have dangerous side effects.

“The reason I think this line of research is particularly exciting is that it could very well get at an actual beginning of the disease, so that we could design therapeutics to perturb the colonization of bacteria… to see whether you can prevent a percentage of disease prevalence by getting rid of colonization. And that would totally change the types of therapies that a rheumatologist could use.”

References

  1. Cross, M. et al. The global burden of rheumatoid arthritis: estimates from the global burden of disease 2010 study. Ann Rheum Dis  73, 1316–1322 (2014).
  2. Chriswell, M. E. et al. Clonal IgA and IgG autoantibodies from individuals at risk for rheumatoid arthritis identify an arthritogenic strain of Subdoligranulum. Science Translational Medicine  14, eabn5166 (2022).
  3. Scher, J. U. et al. Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis. eLife  2, e01202 (2013).
DDN logo

This story was originally published on Drug Discovery News, the leading news magazine for scientists in pharma and biotech.

Related
  • immunology
Research Resources

Did you enjoy this article related to
  • immunology
? Here's a free ebook on the topic.

immunology

Modulating the Immune Response to Vaccines

Researchers uncover innovative natural approaches to fine-tune immunity from vaccination.

Immune responses to vaccination can vary widely between individuals, potentially leading to poor or short-lived immunity under certain circumstances. Scientists turn to innovative approaches for optimal vaccine efficacy and durability, including examining the immune influences of the intestinal microbiome, circadian rhythms, and sex-specific factors and pathogen pre-exposure.

Download this ebook from The Scientist’s Creative Services Team to learn about new research avenues for improving the efficacy and durability of immune responses to vaccination.

Sponsored by

ADVERTISEMENT

Bladder ‘Memory’ Influences Urinary Tract Infection Recurrence in Mice

Urinary tract infections leave permanent epigenetic marks in the mouse bladder epithelium, reprogramming its response to subsequent infections, a study finds.

Bladder epithelial tissue, where cell junctions are shown in green and nuclei in blue. This was grown in vitro from cells taken from mice with chronic cystitis.
alejandra manjarrez
Alejandra Manjarrez, PhD

Alejandra Manjarrez is a freelance science journalist who contributes to The Scientist. She has a PhD in systems biology from ETH Zurich and a master’s in molecular biology from Utrecht University.

View full profile.


Learn about our editorial policies.

ABOVE: Differentiated bladder epithelial tissue in vitro from cells taken from mice with chronic cystitis Seongmi Russell

One of the main challenges for treating urinary tract infections is their high recurrence, especially in women. The underlying mechanisms of this high recurrence rate are not well understood, but having suffered from a previous UTI is a significant risk factor. A study in mice published April 10 in Nature Microbiology proposes that this may be partially explained because an initial urinary infection with Escherichia coli—the culprit of most UTI cases—modifies the host’s epithelial epigenome in such a way that it alters the morphology of the bladder in the long term, influencing the response to future infections by the same bacteria.

“When people think about how our body fights pathogens, they focus on the immune system,” says Shruti Naik, an immunologist at NYU Langone Health who did not participate in this study. She adds that this work shows “clear evidence that changes that occur to epithelial cells . . . have long-term consequences for how we react to” infections.

Some of the researchers behind the new study had already reported in 2016 that mice infected with an initial E. coli UTI resulted in either spontaneous resolution or a chronic cystitis, respectively reducing or increasing susceptibility to future infections. The researchers found then that, in each scenario, the E. coli UTI had differentially modified the bladder epithelium in terms of architecture, morphology, and molecular signatures. This motivated them to study the phenomenon in detail, asking, for instance, whether this remodeling occurs in “the bladder environment overall . . . or [if it is] something intrinsic to the epithelium,” says Thomas Hannan, a mucosal immunologist at Washington University in St. Louis who worked on both studies.

See “Bacteriophages Plentiful in Women’s Bladders

For this, the team—led by Seongmi Russell, a PhD student at the time in the lab of WU’s Scott Hultgren—first isolated the epithelial stem cells from mice with either resolved or chronic infection, and cultured them to see if the cells continued to exhibit notable differences, as they had in vivo. Indeed, the fully differentiated bladder epithelium formed by these cells in vitro mimicked the morphological alterations previously observed in each group of mice. The difference between the two resulting tissues was “striking,” says Hannan. This suggested that there was “something heritable” in the cells leading to these phenotypes, he adds, “and so we hypothesized that it was an epigenetic change.”

They were right. When Hannan and his colleagues performed a series of genomic analyses on the cells, they found “different imprinting on the epigenome depending on the initial disease history, and . . . some of these could explain the phenotypes that we saw,” he says. These epigenetic alterations, namely chromatin accessibility, DNA methylation, and histone modifications, affect how several genes are expressed.

For instance, the team found that the expression of caspase-1, a gene involved in immune cell responses against microbial infections, was dramatically upregulated in the differentiated epithelium from cells of mice with chronic cystitis, while it was almost absent in those coming from mice with resolved infections as well as cells from control mice that were not exposed to E. coli. Caspase-1 induces cell death, which helps get rid of infected cells, but it also promotes inflammation and mucosal wounding, leading to an increased susceptibility to recurrent infections. Thus, the epigenetic changes observed in mice with chronic cystitis are not necessarily “all bad,” Hannan explains, “there’s a reason why we might develop” such responses—“they’re good at the time, but they may not always be good in all circumstances.”

The fact that the same changes in the bladder epithelium could be induced in vivo and in vitro suggests that the underlying epigenetic modifications “are stable and directly link to genes associated with an innate immune defense mechanism against the bacteria,” Gerard Hoyne, an immunologist at the University of Notre Dame Australia who was not involved in this work, writes in an email to The Scientist.

Translating these findings to humans—for instance, to treat recurrent UTIs—is still a distant goal, all sources agree. “A lot of other technologies would need to be in place,” says Hannan, adding that we need a “better understanding of how you can manipulate the epigenome in a very directed way” in order to develop such therapies. Hannan is Chief Scientific Officer of Fimbrion Therapeutics, a company focused on developing antimicrobial drugs to treat infectious diseases.

But the take-home message is that “when we think about infectious disease responses, we need to really start incorporating this idea that the immune system [works] in concert with the rest of the tissue,” says Naik, who had previously reported a similar inflammatory memory in the mouse skin.

May 2023 Digest cover

May 2023

"Silent" Mutations Make Noise in Cancer

Synonymous mutations have been overlooked, but research reveals that they can drive cancer

Composition of DNA with a glitch effect
“Silent” Mutations Make Noise In Cancer
“Silent” Mutations Make Noise In Cancer
Synonymous mutations have long been ignored in cancer studies since they don’t affect the amino acid sequences of proteins. But research increasingly reveals that they can have disease-driving effects.
ADVERTISEMENT
Marketplace

Sponsored Product Updates

Cellecta
Cellecta, Inc. Launches DriverMap™
Cellecta, Inc. Launches DriverMap™
Adaptive Immune Receptor (AIR) Assay to Provide Greater Insights into Immune Repertoire Diversity by Profiling T-Cell and B-Cell Receptor Variability in Genomic DNA
A cluster of blue cells
Optimizing Organoid Models for Basic Research and Translational Applications
Optimizing Organoid Models for Basic Research and Translational Applications
By tracking 3D cultures in real time, researchers obtain reproducible results quickly and efficiently.
Discover How Production Environment Monitoring Improves CAR T Cell Quality and Safety
Monitoring CAR T Cells for Quality, Safety, and Accuracy
Monitoring CAR T Cells for Quality, Safety, and Accuracy
A well-established monitoring system can ensure a constant and stable environment for CAR T cell production.